Lew, S, Koblížek, M, Lew, M, Medová, H, Owsianny, P: Seasonal changes of microbial communities in two shalow peat - bog lakes. Folia Microbiologica, 60, 165-175, 2015.

Koblížek, M, Moulisová, V, Muroňová, M, Oborník, M: Horizontal gene transfers of puf operon in Roseobacter clade. Folia Microbiologica 60, 37- 43, 2015.

Zeng, Y, Feng, F, Medová, H, Dean, J, Koblížek, M: Functional type 2 photosynthetic Reaction centers found in the rare bacterial phylum Gemmatimonadetes. Proceedings of the National Academy of Sciences of the United States of America 111(21), 7795-800, 2014.

Zheng, Q, Koblížek, M, Beatty, JT, Jiao, N: Evolutionary divergence of marine aerobic anoxygenic phototrophic bacteria as seen from diverse organisations of their photosynthesis gene clusters. Advances in Botanical Research 66, 359-383, 2013.

Zeng, YH, Koblížek, M, Li, YX, Liu, YP, Feng, FY, Ji, JD, Jian, JC, Wu, ZH: Long PCR-RFLP of 16S-ITS-23R rRNA genes: a high-resolution molecular tool for bacterial genotyping. Journal of Applied Microbiology 114, 433-447, 2013.

Zeng, Y, Koblížek, M, Feng, F, Liu, Y, Wu, Z, Jian, J: Whole-genome sequences of an aerobic anoxygenic phototroph, Blastomonas sp. strain AAP53, isolated from a freshwater desert lake in Inner Mongolia, China. Genome Anouncements 1(2), e00071-13, 2013.

Zeng, Y, Feng, F, Liu, Y, Li, Y, Koblížek, M: Genome sequences and photosynthesis gene cluster composition of a freshwater aerobic anoxygenic phototroph, Sandarakinorhabdus asp. strain AAP62, isolated from the Shahu Lake in Ningxia, China. Genome Announcements 1(1), e00034-13, 2013.

Šlouf, V, Fuciman, M, Dulebo, A, Kaftan, D, Koblížek, M, Frank, HA, Polívka, T: Carotenoid Charge Transfer States and Their Role in Energy Transfer Processes in LH1-RC Complexes from Aerobic Anoxygenic Phototrophs. Journal of Physical Chemistry B 117, 10987-10999, 2013.

Li, X, Koblížek, M, Feng, F, Li, Y, Jian, J, Zeng, Y: Whole-genome sequence of a freshwater aerobic anoxygenic phototroph, Porphyrobacter sp. strain AAP82, isolated from the Huguangyan Maar Lake in Southern China. Genome Announcements 1(2), e00072-13, 2013.

Koblížek, M, Bláhová, Z: O kódu z ÚOCHB. Vesmír 92, 304-305, 2013.

Koblížek, M, Zeng, Y, Horák, A, Oborník, M: Regressive evolution of photosynthesis in the Roseobacter clade. Advances in Botanical Research 66, 385-405, 2013.

Čuperová, Z, Holzer, E, Salka, I, Sommarunga, R, Koblížek, M: Temporal Changes and Altitudinal Distribution of Aerobic Anoxygenic Phototrophs in Mountain Lakes. Applied and Environmental Microbiology 79, 6439-6446, 2013.

Boldareva–Nuianzina, EN, Bláhová, Z, Sobotka, R, Koblížek, M: Distribution and Origin of Oxygen-Dependent and Oxygen-Independent Forms of Mg-Protoporphyrin Monomethylester Cyclase among Phototrophic Proteobacteria. Applied and Environmental Microbiology 79, 2596-2604, 2013.

Zeng, Y, Kasalický, V, Šimek, K, Koblížek, M: Genome sequences of two freshwater betaproteobacterial isolates, Limnohabitans species strains Rim28 and Rim47, indicate their capabilities as both photoautotrophs and Ammonia oxidizers. Journal of Bacteriology 194, 6302-6303, 2012.

Mašín, M, Čuperová, Z, Hojerová, E, Salka, I, Grossart, HP, Koblížek, M: Distribution of aerobic anoxygenic phototrophic bacteria in glacial lakes of northern Europe. Aquatic Microbial Ecology 66, 77-86, 2012.

Hauruseu, D, Koblížek, M: Influence of light on carbon utilization in aerobic anoxygenic phototrophs. Applied and Environmental Microbiology 78, 7414-7419, 2012.

Atamna-Ismaeel, N, Frinkel, O, Glaser, F, von Mering, C, Vorholt, JAS, Koblížek, M, Belkin, S, Béja, O: Bacterial anoxygenic photosynthesis on plant leaf surfaces. Environmental Microbiology Reports 4(2), 209-216, 2012.

Zheng, Q, Zhang, R, Koblížek, M, Boldareva, EN, Yurkov, V, Yan, S, Jiao, N: Diverse arrangement of  photosynthetic gene clusters in aerobic anoxygenic phototrophic bacteria. PLoS ONE 6(9), e25050.

Salka, I, Čuperová, Z, Mašín, M, Koblížek, M, Grossart, HP: Rhodoferax-related pufM gene cluster dominates the aerobic anoxygenic phototrophic communities in German freswater lakes. Environmental Microbiology 13(11), 2865-2875, 2011.

Medová, H, Boldareva, EN, Hrouzek, P, Borzenko, SV, Namsaraev, ZB, Gorlenko, VM, Namsaraev, BB, Koblížek, M: High abundances of aerobic anoxygenic phototrophs in saline steppe lakes. FEMS Microbiology Ecology 76, 393-400, 2011.