Borodina, AS, Mylnikov, AP, Janouškovec, J, Keeling, PJ, Tikhonenkov, DV*: The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba stagnalis n. Sp. (Vahlkampfiidae; Heterolobosea). Diversity 13(9), 433, 2021. https://doi.org/10.3390/d13090433

Činčárová, D, Hájek, J, Dobřichovský, M, Lukeš, M, Hrouzek, P*: Recommendations on the quantitative analysis of pheophorbides photosensitizers present in algal biomass intended as food supplement. Algal Research 56, 102298, 2021. https://doi.org/10.1016/j.algal.2021.102298

Nupur, Kuzma, M, Hájek, J, Hrouzek, P, Gardiner, AT, Lukeš, M, Moos, M, Šimek, P, Koblížek, M*: Structure elucidation of the novel carotenoid gemmatoxanthin from the photosynthetic complex of Gemmatimonas phototrophica AP64. Scientific Reports 11, 15964, 2021. https://doi.org/10.1038/s41598-021-95254-6

Zavřel, T*, Schoffman, H, Lukeš, M, Fedorko, J, Keren, N, Červený, J: Monitoring fitness and productivity in cyanobacteria batch cultures. Algal Research 56, 102328, 2021. https://doi.org/10.1016/j.algal.2021.102328

Rabouille, S*, Campbell, D, Masuda, T, Zavřel, T, Bernát, G, Polerecky, L, Halsey, K, Eichner, M, Kotabová, E, Stephan, S, Lukeš, M, Claquin, P, Bonomi-Barufi, J, Lombardi, AT, Červený, J, Suggett, DJ, Giordano, M, Kromkamp, JC, Prášil, O: Electron & Biomass Dynamics of Cyanothece Under Interacting Nitrogen & Carbon Limitations. Frontiers in Microbiology 12, 617802, 2021. https://doi.org/10.3389/fmicb.2021.617802

Masojídek, J*, Ranglová, K, Rearte, TA, Celis Plá, PSM, Torzillo, G, Benavides, AMS, Neori, A, Gómez, C, Álvarez-Gómez, F, Lukeš, M, Caporgno, MP, Abdala, R, Miazek, K, Massocato, TF, da Silva, JC, Atzmüller, R, Al Mahrouqui, H, Estrella, FS, Figueroa, FL: Changes in photosynthesis, growth and biomass composition in outdoor Chlorella g120 culture during the metabolic shift from heterotrophic to phototrophic cultivation regime. Algal Research 56, 102303, 2021. https://doi.org/10.1016/j.algal.2021.102303

Knoppová, J, Yu, J, Janouškovec, J, Halada, P, Nixon, PJ, Whitelegge, JP, Komenda, J*: The Photosystem II Assembly Factor Ycf48 from the Cyanobacterium Synechocystis sp. PCC 6803 Is Lipidated Using an Atypical Lipobox Sequence. International Journal of Molecular Sciences 22(7), 3733, 2021. https://doi.org/10.3390/ijms22073733

Polerecky, L*, Masuda, T, Eichner, M, Rabouille, S, Vancová, M, Kienhuis, MVM, Bernát, G, Bonomi-Barufi, J, Campbell, DA, Claquin, P, Červený, J, Giordano, M, Kotabová, E, Kromkamp, J, Lombradi, AT, Lukeš, M, Prášil, O, Stephan, S, Suggett, D, Zavřel, T, Halsey, KH*: Temporal Patterns and Intra- and Inter-Cellular Variability in Carbon and Nitrogen Assimilation by the Unicellular Cyanobacterium Cyanothece sp. ATCC 51142. Frontiers in Microbiology 12, 620915, 2021. https://doi.org/10.3389/fmicb.2021.620915

Bárcenas-Pérez, D, Lukeš, M, Hrouzek, P, Kubáč, D, Kopecký, J, Kaštánek, P, Cheel, J*: A biorefinery approach to obtain docosahexaenoic acid and docosapentaenoic acid n-6 from Schizochytrium using high performance countercurrent chromatography. Algal Research 55, 102241, 2021. https://doi.org/10.1016/j.algal.2021.102241

Tikhonenkov, DV*, Strassert, JFH*, Janouškovec, J, Mylnikov, AP, Aleoshin, VV, Burki, F, Keeling, PJ: Predatory colponemids are the sister group to all other alveolates. Molecular Phylogenetics and Evolution 149, 106839, 2020. https://doi.org/10.1016/j.ympev.2020.106839

Miroliubova, TS*, Simdyanov, TG, Mikhailov, KV, Aleoshin, VV, Janouškovec, J, Belova, PA, Paskerova GG: Polyphyletic origin, intracellular invasion, and meiotic genes in the putatively asexual agamococcidians (Apicomplexa incertae sedis ). Scientific Reports 10, 15847, 2020. https://doi.org/10.1038/s41598-020-72287-x

John, U*, Lu, Y, Wohlrab, S, Groth, M, Janouškovec, J, Kohli, GS, Mark, FC, Bickmeyer, U, Farhat, S, Felder, M, Frickenhaus, S, Guillou, L, Keeling, PJ, Moustafa, A, Porcel, BM, Valentin, K, Glöckner, G*: An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome. Science Advances 5, eaav1110, 2019. https://doi.org/10.1126/sciadv.aav1110

Janouškovec, J*, Paskerova, GG, Miroliubova, TS, Mikhailov, KV, Birley, T, Aleoshin, VV, Simdyanov, TG: Apicomplexan-like parasites are polyphyletic and widely but selectively dependent on cryptic plastid organelles. eLife 8, e49662, 2019. https://doi.org/10.7554/eLife.49662

Lukeš, M*, Giordano, M, Prášil, O: The effect of light quality and quantity on carbon allocation in Chromera velia. Folia Microbiologica 64(5), 655-662, 2019. https://doi.org/10.1007/s12223-019-00734-y

Záhonová, K, Petrželková, R, Valach, M, Yazaki, E, Tikhonenkov, DV, Butenko, A, Janouškovec, J, Hrdá, Š, Klimeš, V, Burger, G, Inagaki, Y, Keeling, PJ, Hampl, V, Flegontov, P, Yurchenko V, Eliáš M*: Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. Scientific Reports 8, 5239, 2018. https://doi.org/10.1038/s41598-018-23575-0

Strassert, JFH*, Karnkowska, A, Hehenberger, E, del Campo, J, Kolisko, M, Okamoto, N, Burki, F, Janouškovec, J, Poirier, C, Leonard, G, Hallam, SJ, Richards, TA, Worden, AZ, Santoro, AE, Keeling, PJ: Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates. The ISME Journal 12, 304–308, 2018. https://doi.org/10.1038/ismej.2017.167

Bass, D*, Tikhonenkov, DV, Foster, R, Dyal, P, Janouškovec, J, Keeling, PJ, Gardner, M, Neuhauser, S, Hartikainen, H, Mylnikov, AP, Berney, C: Rhizarian ‘Novel Clade 10’ revealed as abundant and diverse planktonic and terrestrial flagellates, including Aquavolon n. gen. Journal of Eukaryotic Microbiology 65, 828–842, 2018. https://doi.org/10.1111/jeu.12524

Masuda, T, Bernát, G, Bečková, M, Kotabová, E, Lawrenz, E, Lukeš, M, Komenda, J, Prášil, O*: Diel regulation of photosynthetic activity in the oceanic unicellular diazotrophic cyanobacterium Crocosphaera watsonii WH8501. Environmental Microbiology 20(2), 546-560, 2018. https://doi.org/10.1111/1462-2920.13963

Janouškovec, J*, Gavelis, GS, Burki, F, Dinh, D, Bachvaroff, TR, Gornik, SG, Bright, KJ, Imanian, B, Strom, SL, Delwiche, CF, Waller, RF, Fensome, RA, Leander, BS, Rohwer, FL, Saldarriaga, JF: Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics. Proceedings of the National Academy of Sciences 114, E171–E180, 2017. https://doi.org/10.1073/pnas.1614842114

del Cortona, A, Leliaert, F, Bogaert, KA, Turmel, M, Boedeker, C, Janouškovec, J, Lopez-Bautista, JM, Verbruggen, H, Vandepoele, K, De Clerck, O*: The plastid genome in Cladophorales green algae is encoded by hairpin chromosomes. Current Biology 27, 3771-3782.e6, 2017. https://doi.org/10.1016/j.cub.2017.11.004