Woo, YH*, Ansari, H, Otto, TD, Klinger, CM, Kolisko, M, Michálek, J, Saxena, A, Shanmugam, D, Tayyrov, A, Veluchamy, A, Ali, S, Bernal, A, del Campo, J, Cihlář, J, Flegontov, P,  Gornik, SG, Hajdušková, E, Horák, A, Janouškovec, J, Katris, NJ, Mast, FD,  Miranda-Saavedra, D, Mourier, T, Naeem, R, Nair, M, Panigrahi, AK, Rawlings, ND, Padron-Regalado, E, Ramaprasad, A, Samad, A, Tomčala, A, Wilkes, J, Neafsey, DE, Doerig, Ch, Bowler, Ch, Keeling, PJ, Roos, DS, Dacks, JB, Templeton, TJ, Waller, RF, Lukeš, J, Oborník, M, Pain, A: Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites. eLife 4, 2015. https://doi.org/10.7554/eLife.06974

Tikhonenkov, DV*, Janouškovec, J, Mylnikov, AP, Mikhailov, KV, Simdyanov, TG, Aleoshin, VV, Keeling, PJ: Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., two new alveolate phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and their contributions to reconstructing the ancestral state of alveolates and eukaryotes. PLOS ONE 9, e95467, 2014. https://doi.org/10.1371/journal.pone.0095467

Mikhailov, KV, Janouškovec, J, Tikhonenkov, DV, Mirzaeva, GS, Diakin, AY, Simdyanov, TG, Mylnikov, AP, Keeling*, PJ, Aleoshin, VV*: A complex distribution of elongation family GTPases EF1A and EFL in basal alveolate lineages. Genome Biology and Evolution 6, 2361–2367, 2014. https://doi.org/10.1093/gbe/evu186

Pombert, J-F, Smirnov, A, James, ER, Janouškovec, J, Gray, MW, Keeling PJ*: The complete mitochondrial genome from an unidentified Phalansterium species. Protist Genomics 1, 25–32, 2013. https://doi.org/10.2478/prge-2013-0002

Janouškovec, J*, Horák, A, Barott, KL, Rohwer, FL, Keeling, PJ: Environmental distribution of coral-associated relatives of apicomplexan parasites. The ISME Journal 7, 444–7, 2013. https://doi.org/10.1038/ismej.2012.129

Janouškovec, J*, Liu, S-L, Martone, PT, Carré, W, Leblanc, C, Collén, J, Keeling, PJ: Evolution of red algal plastid genomes: Ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers. PLOS ONE 8, e59001, 2013. https://doi.org/10.1371/journal.pone.0059001

Janouškovec, J*, Tikhonenkov, DV, Mikhailov, KV, Simdyanov, TG, Aleoshin, VV, Mylnikov, AP, Keeling, PJ*: Colponemids represent multiple ancient alveolate lineages. Current Biology 23, 2546–52, 2013. https://doi.org/10.1016/j.cub.2013.10.062

Janouškovec, J*, Sobotka, R, Lai, D-H, Flegontov, P, Koník, P, Komenda, J, Ali, S, Prášil, O, Pain, A, Oborník, M, Lukeš, J, Keeling, PJ: Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Molecular Biology and Evolution 30, 2447–62, 2013. https://doi.org/10.1093/molbev/mst144

Pombert, J-F*, James, ER, Janouškovec, J, Keeling, PJ: Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome. PLOS ONE 7, e53433, 2012.https://doi.org/10.1371/journal.pone.0053433

Janouškovec, J, Horák, A, Barott, KL, Rohwer, FL, Keeling, PJ*: Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs. Current Biology 22, R518-9, 2012. https://doi.org/10.1016/j.cub.2012.04.047

Worden, AZ*, Janouskovec, J, McRose, D, Engman, A, Welsh, RM, Malfatti, S, Tringe, SG, Keeling, PJ: Global distribution of a wild alga revealed by targeted metagenomics. Current Biology 22, R675-7, 2012. https://doi.org/10.1016/j.cub.2012.07.054

Barott, KL*, Rodriguez-Brito, B, Janouškovec, J, Marhaver, K, Smith, JE, Keeling, P, Rohwer, FL: Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis. Environmental Microbiology 13, 1192–204, 2011. https://doi.org/10.1111/j.1462-2920.2010.02419.x

Botté, CY, Yamaryo-Botté, Y, Janouškovec, J, Rupasinghe, T, Keeling, PJ, Crellin, P, Coppel, RL, Maréchal, E, McConville, MJ, McFadden, GI*: Identification of plant-like galactolipids in Chromera velia, a photosynthetic relative of malaria parasites. The Journal of Biological Chemistry 286, 29893–903, 2011. https://doi.org/10.1074/jbc.M111.254979

Oborník, M, Vancová, M, Lai, D-H, Janouškovec, J, Keeling, PJ, Lukeš, J*: Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of Apicomplexa, Chromera velia. Protist 162, 115–30, 2011. https://doi.org/10.1016/j.protis.2010.02.004

Kořený, L, Sobotka, R, Janouškovec, J, Keeling, PJ, Oborník, M*: Tetrapyrrole synthesis of photosynthetic chromerids is likely homologous to the unusual pathway of apicomplexan parasites. The Plant Cell 23, 3454–62, 2011. https://doi.org/10.1105/tpc.111.089102

Koblížek, M*, Janouškovec, J, Oborník, M, Johnson, JH, Ferriera, S, Falkowski, PG: Genome sequence of the marine photoheterotrophic bacterium Erythrobacter sp. strain NAP1. Journal of Bacteriology 193, 5881–2, 2011. https://doi.org/10.1128/JB.05845-11

Janouškovec, J, Horák, A, Oborník, M, Lukeš, J, Keeling PJ*: A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proceedings of the National Academy of Sciences of the United States of America 107, 10949–54, 2010. https://doi.org/10.1073/pnas.1003335107

Zrzavý, J*, Říha, P, Piálek, L, Janouškovec, J: Phylogeny of Annelida (Lophotrochozoa): total-evidence analysis of morphology and six genes. BMC Evolutionary Biology 9, 189, 2009. https://doi.org/10.1186/1471-2148-9-189

Oborník, M*, Janouškovec, J, Chrudimský, T, Lukeš, J: Evolution of the apicoplast and its hosts: from heterotrophy to autotrophy and back again. International Journal for Parasitology 39, 1–12, 2009. https://doi.org/10.1016/j.ijpara.2008.07.010

Moore, RB, Oborník, M, Janouškovec, J, Chrudimský, T, Vancová, M, Green, DH, Wright, SW, Davies, NW, Bolch, CJS, Heimann, K, Slapeta, J, Hoegh-Guldberg, O, Logsdon, JM, Carter, DA*: A photosynthetic alveolate closely related to apicomplexan parasites. Nature 451, 959–63, 2008. https://doi.org/10.1038/nature06635